CMUTEAM · Faculty of Medicine, Chiang Mai University

Suandok Bioinformatics Unit

We turn genomic and multi-omics data into answers for biomedical research — from population genetics in Northern Thailand to cancer and diabetes genomics.

  • Genomics
  • Transcriptomics
  • Proteomics
  • Metabolomics
4omics domains
6team members
4active research themes
2023–26recent publications

Who we are

Bioinformatics in service of biomedical questions

SBU is a bioinformatics team at the Center of Multidisciplinary Technology for Advanced Medicine (CMUTEAM), Faculty of Medicine, Chiang Mai University. We analyse omics data, build computational workflows, and work side by side with researchers and clinicians.

Our projects link genetic variation and population diversity to human disease. Beyond our own studies, we help colleagues plan analyses, design studies and build practical skills through training.

Research themes

What we work on

01In development

Population genomics

Northern Thai imputation server

A genotype-imputation service tailored to Northern and ethnic Thai populations. Imputation estimates unmeasured genotypes from the markers you did genotype, using a reference panel — ours is built from whole-genome data of 2,954 Northern and ethnic Thai individuals.

Open the Suandok Imputation Server →
02Published 2025

Cancer genetic susceptibility

Head-and-neck cancer genetics

Which inherited variants shape risk across head-and-neck cancer subsites and ancestries? SBU contributed to an international cross-ancestry GWAS in Nature Communications that identified 29 risk variants.

Read the paper →
03Ongoing · multicenter

Diabetes genomics & multi-omics

DHARA Consortium

We are founding members of DHARA — the Diabetes Health Analytics and Multi-Omics Research Alliance in Thailand. Partners across the country combine harmonised clinical, genomic and multi-omics data to find molecular signatures and biomarkers of type 2 diabetes and its complications, with strong data governance and privacy safeguards.

04Ongoing

Childhood leukaemia

Genomic profiling of childhood B-ALL

We follow genetic changes in children with B-cell acute lymphoblastic leukaemia in northern Thailand, from diagnosis through remission and relapse, using long-read WGS, exome and (soon) RNA sequencing. The goal: a Thai B-ALL genomic resource and a targeted testing panel for more precise diagnosis and risk assessment.

Research support & training

How we can help

Omics data analysis

Genomics, transcriptomics and proteomics analysis, with methods matched to your question and data.

Pipelines & workflows

Reproducible computational workflows that your team can understand, rerun and extend.

Consultation

Advice on study design, statistics and bioinformatics, starting from your research objectives.

Workshops & training

Hands-on bioinformatics and omics training for researchers, staff and students, in Thai or English.

People

Our team

Photo of Apiwat Sangphukieo

Apiwat Sangphukieo, Ph.D.

Bioinformatics Lead

Computational genomics, machine learning, cancer biology and omics workflow development; interests include human genetic variation and cell-free DNA.

Institutional profile →
Photo of Patcharawadee Thongkumkoon

Patcharawadee Thongkumkoon, Ph.D.

Genomic Variant Analyst

NGS and variant analysis in cancer, rare disease, pharmacogenomics and microbiota.

Profile →
Photo of Sivamoke Dissook

Asst. Prof. Sivamoke Dissook, Ph.D.

Lecturer (Bioinformatics), Dept. of Biochemistry

Metabolomics, proteomics, microbiota and metagenomics.

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Photo of Pitiporn Noisagul

Pitiporn Noisagul, M.Sc.

Bioinformatics Pipeline Developer

Omics pipelines, machine learning, molecular modelling and cancer research.

Profile →
Photo of Lalita Lumkul

Lalita Lumkul, M.Sc.

Genomic Epidemiologist

Genetic epidemiology, polygenic risk, statistics and systematic reviews.

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Photo of Vatusiri Kittiphongsathaporn

Vatusiri Kittiphongsathaporn, B.Sc.

Project Manager

Project coordination and day-to-day support for the team.

Selected research output

Publications

Recent papers coauthored by SBU members. Follow each link for the full author list.

  1. 2026
    HLA allele profiling and association in Thai patients with confirmed beta-lactam hypersensitivity: an NGS-based analysis

    Lumkul L, Kulalert P, Sompornrattanaphan M, et al. Frontiers in Pharmacology 17, 1782094 (2026).

  2. 2026
  3. 2025
    Cross-ancestral GWAS identifies 29 variants across head and neck cancer subsites

    Ebrahimi E, Sangphukieo A, Park HA, et al. Nature Communications 16, 8787 (2025).

  4. 2025
  5. 2024
    Establishment, characterization, and genetic profiling of patient-derived osteosarcoma cells from a patient with retinoblastoma

    Thongkumkoon P, Sangphukieo A, Tongjai S, et al. Scientific Reports 14, 11056 (2024).

  6. 2024
  7. 2023

Get in touch

Collaborate with SBU

For research collaboration, analysis support or training, email us with a short description of your research question and the kind of help you need.

apiwat.sang@cmu.ac.th

Suandok Bioinformatics Unit
CMUTEAM, Faculty of Medicine
Chiang Mai University, Thailand